t-SNE: a two-dimensional representation of the
high-quality cells, the location of cell populations on the embryo
and plotting of gene expression levels on the t-SNE representation for
any given gene that was detected.
vISH: the virtual
hybridization can be used to predict
spatial expression patterns for any given gene that was detected. The
threshold controls the number of locations considered. vISH supports
currently five different views.
vISHs: prediction of spatial expression patterns for two genes at
the same time.
vISH - D. vir: prediction of spatial expression patterns for the
Gradients: expression gradients for the D. mel. genes. The sliders
trim the embryo along the two axes symmetrically, i.e. a value of
slider_x=15 corresponds to looking only at the middle 70% of the
embryo, regarding the AP axis.
DVEX currently offers quantification and spatial expression of 8924
genes and lncRNAs. Note that those should be queried by their respective gene symbols
(Ensembl release 86).
Alternate names, synonymes, CGs, and FBGNs are not yet supported and should be converted, e.g. at
Note that ubiquitous genes are not yet fully supported and their vISH can appear misleading.
Although lowering the threshold to 0 resolves the problems in some of these cases, DVEX is
mainly designed and targeted to patterned genes.